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The Knutt Pipeline
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Installation
KnuttReads2Bins
Read preparation
Read classification
Read annotation
Assembly
Binning
KnuttBinAnno
KnuttBinPhylo
Executing
Running locally
Using external executors (AWS/HPC)
Using a cluster
Shared File Formats
Check out the repos on Github
Started at the UAS Emden/Leer
Executing
This section will give general instructions on how to run Snakemake workflows.
Table of contents
Running locally
Using external executors (AWS/HPC)
Using a cluster